Jari Holopainen Dissertation Topics

Since 2014, many PhD students have defended their theses and have gained employment positions both in Finland and abroad.

2017

27) Tanja Paasela (15th December)
The stilbene biosynthetic pathway and its regulation in Scots pine
e-thesis link
Supervisor: Teemu Teeri
Research scientist, Natural Resources Centre, Finland

26) Mikko Piirainen (13th December)
Taxonomic and phylogenetic studies on Salicornioideae (Amaranthaceae)
e-thesis link
Supervisor: Pertti Uotila
Research scientist, Finnish Museum of Natural History

25) Marja Rantanen (15th September)
Light and temperature as developmental signals in woodland strawberry and red raspberry
e-thesis link
Supervisors: Timo Hytönen, Pauliina Palonen & Paula Elomaa
Research scientist, Natural Resources Centre, Finland

24) Kean-Jin Lim (25th August)
Scots pine (Pinus sylvestris L.) heartwood formation and wounding stress: A view from the transcriptome
e-thesis link
Supervisor: Teemu Teeri
Post-doctoral researcher, University of Helsinki, Finland

23) Pär Davidsson (30th June)
Oligogalacturonide signalling in plant innate immunity
e-thesis link
Supervisor: Tapio Palva
Post-doctoral researcher, University of Helsinki, Finland

22) Mantas Survila (28th April)
Immune Responses to Pathogen Infection in Arabidopsis
e-thesis link
Supervisors: Tapio Palva & Pekka Heino
Post-doctoral researcher, University of Helsinki, Finland

21) Juha Kontturi (10th February)
Type III polyketidesynthases from Gerbera hybrida
e-thesis link
Supervisor: Teemu Teeri
Research scientist, Medix Biochemica, Finland

2016
20) Lauri Reuter (9th December)
Plant Cell Factories: Production of hydrophobin fusion proteins in plant cell cultures
VTT publication link
Supervisors: Anneli Ritala, Jussi Joensuu & Teemu Teeri
Research scientist, VTT-Technical Research Centre of Finland

19) Viacheslav Spirin (11th November)
Taxonomy and phylogeny of brown-rot fungi in the Antrodia complex (Polyporales, Basidiomycota)
e-thesis link
Supervisors: Tuomo Niemelä, Otto Miettinen

18) Hannu Hotti (14th October)
The killer of Socrates exposed - Coniine in the plant kingdom
e-thesis link
Supervisors: Heiko Rischer, Kirsi-Marja Oksman-Caldentey & Teemu Teeri
Post-doctoral researcher, University of Helsinki, Finland

17) Elli Koskela (2nd September) Awarded the best PhD thesis prize of 2016!
Genetic and environmental control of flowering in wild and cultivated strawberries
e-thesis link
Supervisors: Timo Hytönen & Paula Elomaa
Post-doctoral researcher, University of Helsinki, Finland

16) Sedeer El-Showk (30th May)
Auxin and cytokinin interactions regulate primary vascular patterning during root development in Arabidopsis thaliana
e-thesis link
Supervisor: Ykä Helariutta
Freelance journalist for Nature Communications

15) Hanna Help-Rinta-Rahko (22nd April)
The interaction of auxin and cytokinin signalling regulates primary root procambial patterning, xylem cell fate and differentiation in Arabidopsis thaliana
e-thesis link
University of Helsinki, Faculty of Agriculture and Forestry, Department of Agricultural Sciences
Supervisor: Ykä Helariutta
Post-doctoral researcher, University of Helsinki, Finland

14) Hany El Sayed Bashandy (23rd January)
Flavonoid metabolomics in Gerbera hybrida and elucidation of complexity in the flavonoid biosynthetic pathway
e-thesis link
University of Helsinki, Faculty of Agriculture and Forestry, Department of Agricultural Sciences
Supervisor: Teemu Teeri
Post-doctoral researcher, University of Helsinki, Finland

2015
13) Niina Idänheimo (18th December)
The Role of Cysteine-rich Receptor-like Protein Kinases in ROS Signalling in Arabidopsis thaliana
e-thesis link
University of Helsinki, Faculty of Biological & Environmental Sciences, Department of Biociences
Supervisors: Jaakko Kangasjärvi & Michael Wrzaczek
Post-doctoral researcher, Aalto University, Finland

12) Susanna Keriö (11th December)
Terpene analysis and transcript profiling of the conifer response to Heterobasidion annosum s.l. infection and Hylobius abietis feeding
e-thesis link
University of Helsinki, Faculty of Agriculture and Forestry, Department of Forest Sciences
Supervisor: Fred Asiegbu
Post-doctoral researcher, Oregon State University, USA

11) Venla Jokela (27th November)
Regulation of flowering and canopy structure in timothy (Phleum pratense L.)
e-thesis link
University of Helsinki, Faculty of Agriculture & Forestry, Department of Agricultural Sciences
Supervisor: Mervi Seppänen
Account manager, Eurofins Viljavuuspalvelu Oy (agro soil testing laboratory)

10) Linda Garlant (1st October)
Interaction between Hormone and Apoplastic ROS Signaling in Regulation of Defense Responses and Cell Death
e-thesis link
University of Helsinki, Faculty of Agriculture & Forestry, Department of Agricultural Sciences
Supervisor: Minna Pirhonen
Research assistant, Scientific Institute of Public Health, Belgium

9) Enjun Xu (12th June)
Interaction between Hormone and Apoplastic ROS Signaling in Regulation of Defense Responses and Cell Death
e-thesis link
University of Helsinki, Faculty of Biological & Environmental Sciences, Department of Biociences
Supervisor: Mikael Brosché
Assistant Professor at the Chinese Academy of Sciences, China

8) Mehmet Ali Keçeli (8th May)
Crosstalk in Plant Responses to Biotic and Abiotic Stresses
e-thesis link
University of Helsinki, Faculty of Biological & Environmental Sciences, Department of Biociences
Supervisors: Tapio Palva & Gunter Brader
Plant Pathologist at MAY Agro Seed Company, Turkey

7) Ulla Holopainen-Mantila (20th March)
Composition and structure of barley (Hordeum vulgare L.) grain in relation to end uses
e-thesis link
University of Helsinki, Faculty of Biological & Environmental Sciences, Department of Biociences & VTT
Supervisors: Kurt Fagerstedt, Annika Wilhelmson
Research scientist, VTT, Finland

6) Martin Broberg (20th March)
Genetic profiling of the interactions between soft rot Pectobacterium species and plants
e-thesis link
University of Helsinki, Faculty of Biological & Environmental Sciences, Department of Biociences & Faculty of Agriculture & Forestry, Department of Agricultural Sciences
Supervisors: Tapio Palva, Minna Pirhonen
Post-doctoral researcher, Swedish University of Agricultural Sciences (SLU), Sweden

2014
5) Fuqiang Cui (16th December)
ROS signaling, phytohormone signaling and toxin tolerance: defense mechanisms in Arabidopsis thaliana against Botrytis cinerea
e-thesis link
University of Helsinki, Faculty of Biological & Environmental Sciences, Department of Biociences
Supervisor: Kirk Overmyer
Assistant Professor at the Zhejiang A& F University, China

4) Emad Jaber (31st October)
Pathobiology of Heterobasidion -Conifer tree interaction: Molecular Analysis of Antimicrobial peptide genes (Sp-AMPs)
e-thesis link
University of Helsinki, Faculty of Agriculture and Forestry, Department of Forest Sciences
Supervisor: Fred Asiegbu
Post-doctoral researcher, University of Helsinki, Finland

3) Hamid Khazaei (26th September)
Leaf traits associated with drought adaptation in faba bean (Vicia faba L.)
e-thesis link
University of Helsinki, Faculty of Agriculture and Forestry, Department of Agricultural Sciences
Supervisor: Fred Stoddard
Post-doctoral researcher, University of Saskatchewan, Canada

2) Oswalt R. Jiménez (26th June)
Genetic improvement of the common bean (Phaseolus vulgaris L.) using local germplasm assisted by molecular markers
e-thesis link
University of Helsinki, Faculty of Agriculture and Forestry, Department of Agricultural Sciences
Supervisor: Helena Korpelainen
Researcher, Nicaragua

1) Kati Mouhu (10th January)
Molecular control of the yearly growth cycle in wild strawberry
e-thesis link
University of Helsinki, Faculty of Agriculture and Forestry, Department of Agricultural Sciences
Supervisors: Paula Elomaa, Timo Hytönen
Post-doctoral researcher, University of Helsinki, Finland

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